Albert Dominguez Mantes

@Albertdm99

PhD student @EPFL developing computational methods for microscopy images || BSc in Data Science @la_UPC

Lausanne, Switzerland Joined September 2017

358 Following 233 Followers 131 Posts

Latest posts 5

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Albert Dominguez Mantes @Albertdm99 Jun 6, 2025

Spotiflow, our deep learning based spot detection method for microscopy, is now published in @naturemethods!
Since the pre-print, we have added many cool features, notably native 3D detection!
@martweig @GioeleLaManno @epflSV @EPFL_Imaging
Paper: rdcu.be/epIB7
(1/N)

Martin Weigert (maweigert.bsky.social) @martweig Feb 6, 2024

Excited to share Spotiflow, our new spot detection method for image-based spatial transcriptomics that facilitates the analysis of large iST images. Lead by @Albertdm99 jointly w @GioeleLaManno @epflSV @EPFL_Imaging @EPFL_BioE biorxiv.org/content/10.110…
github.com/weigertlab/spo…

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Albert Dominguez Mantes @Albertdm99 Mar 15, 2024

Awesome work (and talk!) by my colleague @bengallusser!

Ben Gallusser @bengallusser Mar 15, 2024

Was fun to present my current work on learnt cell tracking at @embl during the #aiandbiology conference this week. so many great discussions. We are curious to test our models on new challenging datasets, my mailbox is open ;)

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Albert Dominguez Mantes @Albertdm99 Feb 7, 2024

First project of my PhD is finally out! Many thanks to @martweig, @GioeleLaManno and everyone involved. Being able to work with such a variety of modalities in the same project is awesome. Usability is at the core of Spotiflow, hoping you give it a go to detect fluorescent spots!

Martin Weigert (maweigert.bsky.social) @martweig Feb 6, 2024

Excited to share Spotiflow, our new spot detection method for image-based spatial transcriptomics that facilitates the analysis of large iST images. Lead by @Albertdm99 jointly w @GioeleLaManno @epflSV @EPFL_Imaging @EPFL_BioE biorxiv.org/content/10.110…
github.com/weigertlab/spo…

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Albert Dominguez Mantes @Albertdm99 Aug 1, 2023

Neural ADMIXTURE 1.3.0 is out! For those owning a Macbook with an M1 or M2 chip, we now allow MPS acceleration. No changes from the user side: you can just reuse the same scripts after updating the tool. On an M1 Max, it takes just 4min to get results on 3k samples and 840k SNPs!

Alexander G. Ioannidis Verified account @alexGioannidis Jul 6, 2023

Tired of waiting to cluster genomes?

Out now from our group, Neural ADMIXTURE clusters the entire UK Biobank (nearly half a million sequences, below) in hours for multiple Ks vs > a month for ADMIXTURE.

🎉 to @Albertdm99 on his first 1st author paper!

nature.com/articles/s4358…

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Albert Dominguez Mantes @Albertdm99 Jul 6, 2023

Very happy this is finally out, looking forward to people using and contributing to the software! Many many thanks to @_danielmas @alexGioannidis @DocXavi @cdbustamante🙌

Code at github.com/ai-sandbox/neu…

Alexander G. Ioannidis Verified account @alexGioannidis Jul 6, 2023

Tired of waiting to cluster genomes?

Out now from our group, Neural ADMIXTURE clusters the entire UK Biobank (nearly half a million sequences, below) in hours for multiple Ks vs > a month for ADMIXTURE.

🎉 to @Albertdm99 on his first 1st author paper!

nature.com/articles/s4358…

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