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Kyle Tretina, Ph.D.

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@AllThingsApx

Follow for AI in the Life Sciences @NVIDIA, ex Insilico Medicine, ex Yale, PhD UMaryland, views are mine, DM for collabs
Boston, MA linkedin.com/in/kyle-tretin… Joined November 2013
503 Following 4.6K Followers 10K Posts

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Kyle Tretina, Ph.D. Verified account @AllThingsApx
🧬 DNA-binder design could make gene targeting less constrained by natural protein scaffolds

📊 High-thinking RFD4-Proteina had a 3.5% computational clustered pass rate versus 0.8% for fixed-DNA BoltzGen across three targets

If you are designing sequence-specific gene-control tools, you should check this out
1 replies 2 reposts 15 likes 746 views View on X
Kyle Tretina, Ph.D. Verified account @AllThingsApx
⚗️ Enzyme design is expanding the chemistry we can perform 🧪

For enzyme scaffolding, high-thinking RFD4-Proteina achieved a 12.1% computational clustered pass rate versus 5.7% for AlphaProtein-novo codesign 📊

Please test this model on custom industrial catalysts and share your results here!
1 replies 1 reposts 12 likes 927 views View on X
Kyle Tretina, Ph.D. Verified account @AllThingsApx
🧪 Designed binders could expand chemical sensing beyond natural receptors

High-thinking RFD4-Proteina generated at least one design passing computational structural checks for each of 77 benchmark targets

Can't wait to see the custom biosensors people design for drugs and metabolites with this! 🔬
1 replies 0 reposts 15 likes 1.2K views View on X
Kyle Tretina, Ph.D. Verified account @AllThingsApx
🧩 Protein design is moving from folds to molecular recognition

High-thinking RFD4-Proteina achieved 42x higher generation throughput than the benchmark's single-backbone BindCraft, with a higher computational clustered pass rate ⚡

Protein binder design just took a jump forward
3 replies 7 reposts 46 likes 2.2K views View on X