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Žiga Avsec

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@Avsecz

Genomics initiative lead at @GoogleDeepMind.

Models from our team: Enformer, AlphaMissense, and AlphaGenome.
Joined December 2015
539 Following 3.4K Followers 465 Posts

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Žiga Avsec Verified account @Avsecz
AlphaGenome 2 is live! A step change in performance and new capabilities over AG1! @adamgayoso's thread covers the key results.

Manuscript: storage.googleapis.com/deepmind-media…
Blog: deepmind.google/blog/alphageno…
API: github.com/google-deepmin…

A few notes under the hood & what's next:
Adam Gayoso Verified account @adamgayoso 3d
Single-cell atlases continue to map the diversity of cell states, but how can we use them to interpret non-coding genetic variants?

Excited to share AlphaGenome 2, our model for predicting cell-type-specific regulatory activity and variant effects from DNA sequence.

deepmind.google/blog/alphageno…
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Žiga Avsec Verified account @Avsecz
Very excited that we are joining the Virtual Biology Initiative. Generating data at large scale is critically important for many types of predictive models and applications. This level of funding will definitely move the needle on model performance. Looking forward to working with the scientific community to shape the experimental design.
Pushmeet Kohli Verified account @pushmeet Oct 7
Building predictive biology models is one of the most important scientific challenges of our time, but solving this requires new experimental biological data at an unprecedented scale.

I’m pleased to announce that @GoogleDeepmind is partnering with @ChanZuckerberg’s Virtual Biology Initiative to create the multi-modal datasets needed for improved predictive biology models.

I wrote recently about the need to discover how life works at many different scales, from DNA and individual proteins to living cells and whole-body health. As we learnt from AlphaFold and the Protein Data Bank, solving grand biological challenges will not be possible without high-quality open data and efforts like the @czbiohub initiative.

Read the announcement here: biohub.org/news/virtual-b…

And my previous essay here: linkedin.com/pulse/understa…

@AllenInstitute, @BroadInstitute, @GladstoneInst, @humancellatlas, @ProteinAtlas, @sangerinstitute, @IsomorphicLabs, @Meta
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Žiga Avsec Verified account @Avsecz
Excited to release AlphaGenome Atlas 🧬 We used AlphaGenome to predict the regulatory impact of all 9B possible SNVs in the human genome. We collaborated with amazing scientists to analyze and apply it, and developed a portal to browse the genome using this new lens 🔬

🌐 Portal: alphagenome.google/atlas
📖 Blog: goo.gle/4heuCvn
📄 Preprint: deepmind.google/blog/alphageno…
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