BioNumPy

@BioNumPy

Python library for array programming on biological datasets. Documentation available at: bionumpy.github.io/bionumpy/

Joined January 2023

26 Following 55 Followers 13 Posts

Latest posts 5

BioNumPy @BioNumPy Oct 18, 2024

And we're now published in Nature Methods 🥳 Full article here: nature.com/articles/s4159…

www.nature.com BioNumPy: array programming for biology Nature Methods - BioNumPy: array programming for biology

Geir Kjetil Sandve @SandveGeir Oct 18, 2024

Finally biologists can also use numpy (array programming). Handling e.g. DNA and protein sequences with convenience and speed, like physicists and machine learners for decades have worked with numerical data: nature.com/articles/s4159… (1/3)
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BioNumPy @BioNumPy Mar 6, 2023

BioNumPy has been updated with changes that make it a lot easier to work with genomic intervals and data on a reference genome 😀

Here are a few cool examples to illustrate the new stuff:

BioNumPy @BioNumPy Jan 13, 2023

Day 5/5 of short BioNumPy examples: Finding the most common kmers in a FASTQ-file.

Try out the code here: colab.research.google.com/github/bionump…

Check out our documentation for more cool examples: bionumpy.github.io/bionumpy🤠

BioNumPy @BioNumPy Jan 12, 2023

Day 4 of small #BioNumPy examples: Sequence matching (searching for a sequence in a set of reads).

Try out the code here: colab.research.google.com/github/bionump…

BioNumPy @BioNumPy Jan 11, 2023

Day 3 of small BioNumPy examples: Plotting the mean base qualities across reads.

Try out the code here: colab.research.google.com/github/bionump…

.. and remember to follow us for daily examples😋