UPDATES: SARS-CoV-2 - Pangolin has been updated to PangoLEARN 2021-11-04
Pathogenwatch
@Pathogenwatch
A global platform for genomic pathogen surveillance. Delivered by @thecgps @bdi_oxford
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Latest posts 5
We have updated Typhi Pathogenwatch with 520 public genomes from 10 published studies, including several reports of azithromycin-R and XDR isolates. Genotyping updated as per GenoTyphi v1.9.1, and the AMR library now includes the acrB_R717L mutation.
great to see work from @GHRUamr and WGS impact within foodborne surveillance in Latin America @NIHRglobal
Second PulseNetLAC day!! Brutal productive and very impresive how WGS is comming the first option in surveillance of foodborne pathogens and one health approaches in region!! Argentina, Chile, Colombia, Mexico and Perú @SomosAGROSAVIA @pahowho @MyMicroreact @PathogenwatchView quoted post on X
UPDATE: Addition of 937 Salmonella Typhi genomes and 7 new collections (thanks @silargi). Screenshot shows tree of 4389 public genomes with MDR strains highlighted (pathogen.watch/collection/07l…). Add your own genomes for automatic contextualisation and prediction of AMR determinants.
We're excited to announce Pathogenwatch now has 14,444 N. gonorrhoeae genome assemblies (pathogen.watch/genomes/all?ge…) with location metadata and 25 new curated collections based on publications. All annotated with a new antimicrobial resistance library developed at the @TheCGPS.
