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Sarah Alamdari

@SarahAlamdari

Interested in all things deep learning, biology, and molecular dynamics. @MSRNE #diversity & #representation matter (she/her)
Cambridge, MA sarahalamdari.com Joined April 2019
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Sarah Alamdari @SarahAlamdari
I'm recruiting PhD interns for Summer 2027! If you’re excited about using generative protein language models to tackle real functional protein problems, please apply here!
Are you a PhD student interested in the intersection of machine learning and biology or healthcare?

Come do an internship with the BioML Group at MSR!

Make sure you submit a research statement!

apply.careers.microsoft.com/careers/job/19…
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Sarah Alamdari @SarahAlamdari
Kieran is having a generational protein design run this month 👀🔥
Kieran Didi Verified account @DidiKieran Oct 21
Avengers assemble: 1 year BakerLab + NVIDIA GenAIR = 🔥 rfd4-proteina.org

Presenting RFD4-Proteina, our latest protein design model, significantly better and faster than everything we compared against, both in silico and in the lab! 1/30
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Sarah Alamdari @SarahAlamdari
During my PhD (not that long ago...) a single simulation on a single system could take weeks to months. It’s amazing to see that timeline collapsing so quickly!

Congrats to the team, looking forward to playing around with this!
Frank Noe @FrankNoeBerlin Oct 20
Dynamics: folding & binding of an intrinsically disordered peptide to its protein receptor via an intermediate state.

A 5 milliseconds simulation would take >10 GPU years with MD simulation.
At 5 microsecond steps, BioEmu2 needs 40 minutes on the same GPU – a >100,000 x speedup!
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