Spatial Omics

@SpatialOmics

Tweets about spatial biology including genomics, transcriptomics, proteomics, or other -omics in general. Some tweets about single-cell DNA or RNA sequencing.

Joined June 2020

189 Following 1.2K Followers 415 Posts

Latest posts 5

Spatial Omics @SpatialOmics Jan 10, 2024

"Spatial Transcriptomics Sequencing of Mouse Liver at 2 Micron Resolution Using a Novel Spatial DNA Chip"
We present spatial transcriptomics data using a novel high-resolution DNA chip with a capture region feature size of 2 x 2um
biorxiv.org/content/10.110…

www.biorxiv.org Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip Spatial transcriptomics has showcased its efficacy in deciphering the intricate relationships between individual cells and tissues. We present spatial transcriptomics data using a novel high-resolu...

Spatial Omics @SpatialOmics Dec 4, 2023

ComSeg is a segmentation algorithm that operates directly on single RNA positions and it does not come with implicit or explicit priors on cell shape. ComSeg is thus applicable in complex tissues with arbitrary cell shapes.
biorxiv.org/content/10.110…

www.biorxiv.org A point cloud segmentation framework for image-based spatial transcriptomics Recent progress in image-based spatial RNA profiling enables to spatially resolve tens to hundreds of distinct RNA species with high spatial resolution. It hence presents new avenues for comprehend...

Spatial Omics @SpatialOmics Nov 22, 2023

Currently do not "have sufficient resolution for robust analysis of 3D cultures"
Here's a "transfection-based method for fluorescent DNA barcoding of cell populations" and "subsequent construction of spheroidal cellular architectures using barcoded cells"
biorxiv.org/content/10.110…

Spatial Omics @SpatialOmics Nov 4, 2023

biorxiv.org/content/10.110…

Spatial Omics @SpatialOmics Jun 22, 2023

biorxiv.org/content/10.110…