If you’re interested in learning more about single-cell and spatial transcriptomics and proteomics, join us for CSAMA 2024 in the beautiful Italian Alps! List of faculty, topics, and registration info at csama2024.bioconductor.eu
Davide Risso
@drisso1893
Statistician; Asst prof at @unipadova; (mediocre) soccer player :)
Mastodon: @drisso@genomic.social
Mastodon: @drisso@genomic.social
746 Following 906 Followers 1.2K Posts
Latest posts 5
Just in time for the holidays, I'm really happy to share our latest work on differential detection in single-cell RNA-seq! A simple way to go beyond differential average expression between conditions in multi-sample datasets! See 👇 for details!
Why would we only care about differences in the **average** gene expression in a scRNA-seq DE analysis? 🤔View quoted post on X
We present a framework to jointly test for differences in average gene expression and gene DETECTION. Extra hypothesis tested, no extra cost!
biorxiv.org/lookup/content…
Illuminating talk on many levels! Thanks @jsb_ucla! My take home messages: think carefully about what null hypothesis you are really testing and about the assumptions of your model!
Prepared this for #CSAMA2023 to introduce HDF5 and DelayedArray, might as well monetize! #bioc2023 #biocmeme @bioconductor
📣 Join the Bioconductor Meme Contest 🏆 Show us your creativity!View quoted post on X
To enter:
1️⃣ Create a Bioconductor meme
2️⃣ Share it on Twitter/Mastodon
3️⃣ Tag @Bioconductor, add #bioc2023 #biocmeme
4️⃣ Drop the URL in our #bioc2023 Slack channel: slack.bioconductor.org
Tips and prize info 👇
Do you want to explore how to use GPUs to accelerate single-cell omics data analysis? Are you passionate about developing/implementing/benchmarking statistical approaches for omics data? Consider applying for a PhD scholarship to work in my research group at Padova!