Matt Holt

@holtjma

Staff scientist at @PacBio; formerly @hudsonalpha; avid gamer; opinions are my own; @holtjma@genomic.social, @holtjma.bsky.social

Joined December 2009

264 Following 535 Followers 8K Posts

Latest posts 5

Pinned post

Matt Holt @holtjma Jan 26, 2024

Excited to announce that our accompanying paper on HiPhase has been published today, I'll highlight some of the additions in this thread! #PacBio #HiFi

“HiPhase: Jointly phasing small, structural, and tandem repeat variants from HiFi sequencing”: doi.org/10.1093/bioinf…

Matt Holt @holtjma Oct 30, 2023

I'm pleased to announce the release of HiPhase v1.0.0! In addition to phasing small and structural variants from #PacBio #HiFi datasets, HiPhase now also includes support for phasing short tandem repeats (#STR) at the same time!

Full release notes: github.com/PacificBioscie…
View quoted post on X

Matt Holt @holtjma Dec 11, 2024

“StarPhase: Comprehensive Phase-Aware Pharmacogenomic Diplotyper for Long-Read Sequencing Data” is now available online! In this work, we explore the use of long-read sequencing (#PacBio #HiFi) for #pharmacogenomics #PGx. 1/2

Matt Holt @holtjma Nov 11, 2024

If you missed this poster session at #ASHG24, you can now view the poster online! Happy to have a chat if you're interested in long-read PGx with #PacBio!

pacb.com/wp-content/upl…

Matt Holt @holtjma Nov 8, 2024

Final #ASHG24 poster session is starting now, come say hi if you’re interested in long read PGx, poster 7021!
View quoted post on X

Matt Holt @holtjma Nov 8, 2024

Final #ASHG24 poster session is starting now, come say hi if you’re interested in long read PGx, poster 7021!

Matt Holt @holtjma Nov 8, 2024

It’s a packed room for Xiao Chen’s talk on resolving paralogous genes with #PacBio HiFi sequencing! #ASHG24