Danny IncaRNAto

@incaRNAtolab

Associate Professor @univgroningen @ResearchGbb | Chief R&D Officer @serna_bio | #RNA structure ensemble dynamics | 🦋 incarnatolab.bsky.social

Groningen, Netherlands incarnatolab.com Joined December 2009

481 Following 1.8K Followers 2.4K Posts

Latest posts 5

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Danny IncaRNAto @incaRNAtolab Jul 25, 2025

I am so incredibly excited to share our latest work, on the exploration of #RNA secondary structure ensembles and discovery of RNA regulatory structural switches in bacteria and human cells, out today in @NatureBiotech: nature.com/articles/s4158…. A short tread! (1/n)

www.nature.com Identification of conserved RNA regulatory switches in living cells using RNA secondary structure... Nature Biotechnology - Transcriptome-scale maps of RNA secondary structure ensembles in living cells detect candidate RNA structural switches.

Danny IncaRNAto @incaRNAtolab Oct 22

RFviewJS v1.2.0 for #RNA secondary structure visualization is out!

This release features many fixes and new features. Particularly, we introduced Outline mode, useful for example to generate review-ready pictures of large multi-domain RNAs.

github.com/dincarnato/RFv…

Danny IncaRNAto @incaRNAtolab Oct 8

#RNA Framework 2.9.8 is out! Check the full CHANGELOG: github.com/dincarnato/RNA…. Get the latest version at: github.com/dincarnato/RNA…

This release features a major renovation of the engine. A few highlights in a short thread (1/n).

github.com RNAFramework/CHANGELOG.md at master · dincarnato/RNAFramework RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis - dincarnato/RNAFramework

Danny IncaRNAto @incaRNAtolab Sep 11

Reproducible #RNA structure analysis workflows with @nf_core #rnastructurome, built on top of our RNA Framework (rnaframework.incarnatolab.com)!

So excited to see this out, congrats to Victoria Begley and the whole @emblebi RNA Resources team!

RNAcentral @RNAcentral Sep 11

We're excited to announce the first release of the #nfcore #rnastructurome pipeline! 🎉 nf-co.re/rnastructurome…
This pipeline provides a standardised workflow for analysing public chemical probing datasets to generate RNA reactivity profiles and predict #RNA secondary structures.
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Danny IncaRNAto @incaRNAtolab Sep 4

RFview 1.1.7 for #RNA secondary structure visualization is out! Check it out: github.com/dincarnato/RFv…

github.com Release RFview v1.1.7 · dincarnato/RFviewJS RFview v1.1.7