Shreejoy Tripathy

@neuronJoy

Associate Prof doing bioinformatics and computational neuro at @UofT and @CAMHresearch. Tweets about neurons, ephys, and single-cell RNAseq.

Toronto, Ontario triplab.org Joined February 2009

2.9K Following 3K Followers 5.5K Posts

Latest posts 5

Shreejoy Tripathy @neuronJoy 4d

my lab has been lucky to be using brisc over the last few months as early beta testers and I can say that it's truly transformative for you can do with single-cell data.

Michael Wainberg @michaelwainberg 4d

Thrilled to release the biggest project of my career: brisc, a full-fledged single-cell toolkit that runs multithreaded at 100x the speed of Scanpy and Seurat on tens of millions of cells.
brisc.run
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Shreejoy Tripathy @neuronJoy Nov 2

My lab does something like a mix of traditional lab meetings (1 presenter for one hour) and continual update lab meetings (everyone briefly presents, 3-5 minutes per person). we do these in separate weekly meetings and it works fairly well.

Ishwariya Venkatesh Verified account @Ishwariya13 Nov 2

One of the most unique things to each lab is how they run their lab meetings. Ours is a bit different from most labs. Everyone is up every week. Yes everyone , not once in 2 months update but rather weekly updates by all. Let me break it down why this works for us 🧵

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Shreejoy Tripathy @neuronJoy Sep 29

who knew that countless hours playing starcraft in highschool would pay off handsomely in this era of agentic ai. still need more pylons though.

Shreejoy Tripathy @neuronJoy Sep 22

New preprint from our lab: "Selective depletion of upper-layer somatostatin interneuron subtypes in schizophrenia." The largest case/control single-cell analysis of the schizophrenia brain to date. 🧵
biorxiv.org/content/10.648…

www.biorxiv.org Selective depletion of upper-layer somatostatin interneuron subtypes in schizophrenia Schizophrenia (SCZ) is associated with cortical GABAergic dysfunction, but whether inhibitory interneurons are lost or persist in an altered molecular state remains unresolved. Here, we harmonized...

Shreejoy Tripathy @neuronJoy Aug 25

Really grateful to play a minor part in this exciting study led by @_GA_Craig and Veronica! Huge congrats to the team and excited to see it out!

Nature Medicine Verified account @NatureMedicine Aug 25

Oligodendrocyte dysfunction in human age-related cognitive decline dlvr.it/TV977q
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