antisense.

Between language and causality, ephemeral echoes trace the edge of consciousness— intelligence is but a transient footprints.

Contextual gene states support gene-expression reconstruction, while CLS-conditioned reconstruction and contrastive learning provide complementary supervision for the cell-level representation.

SpaAxFormer first contextualizes genes within each cell and then exchanges corresponding-gene states across spatial neighbors, while a separate CLS representation provides a cell-level summary.

SpaAxFormer: Fine-Grained Token Modeling of Spatial Transcriptomics with Axial Transformers biorxiv.org/content/10.648…

This stacking strategy lets the ensemble leverage the complementary strengths of different integration and embedding methods (e.g., Harmony, Scanorama, scVI, scGPT, scANVI).