Mathias Wilhelm

Wilhelm Lab has arrived at #HUPO2026 in Singapore!

Catch us presenting across five talks/posters spanning databases, de novo peptide sequencing, Match-Between Run, and crop proteomics — swing by and say 👋 or scan the QR code to learn more about our work.

Prosit-MultiFrag, a model predicting spectra for UVPD, ECD, ETciD & EID, is out 🚀
🔗 nature.com/articles/s4159…
Great collaboration with Shabaz Mohammed & Nikita Levin.

Try it via Koina koina.proteomicsdb.org and Oktoberfest: github.com/wilhelm-lab/ok…

#Proteomics #MassSpectrometry

You want easy access, integration, and reuse of deep learning models?🤖
You want to plug new models into your pipelines without pain?🔌
Koina is your solution🚀rdcu.be/ePqaA
An open and decentralized model hub — built to make ML in proteomics usable🌐
#proteomics #AI

After a long journey, we’re thrilled to share our new preprint! 🎉
🔬 Prosit-PTM leveraging ProteomeTools-PTM and novel data augmentation to enable zero-shot prediction
👉 Boosts PTM site localization, histone peptide IDs, and even modifications on HLA peptides
#AI #Proteomics

🚀 Join us for a PhD in AI & proteomics!
Work on confidence prediction for fine-tuned AI peptide property models with applications in single-cell proteomics.
🔬 Apply by Nov 30 2025:
👉 tinyurl.com/5csmhw52

#PhD #AI #Proteomics #MachineLearning #TUM #MarieCurie #Research