We've been making steady usability updates to the sawfish SV caller thanks to user feedback, including a new feature to output all supporting reads for each SV. The latest binary, user guide, and (new) source code release are available on github here:
github.com/PacificBioscie…
github.com/PacificBioscie…
github.com GitHub - PacificBiosciences/sawfish: Joint structural variant and copy number variant caller for... Joint structural variant and copy number variant caller for HiFi sequencing data - PacificBiosciences/sawfish We assessed our new method on the recent draft GIAB SV benchmark from the T2T-HG002-Q100 assembly, finding sawfish has the highest F1-score among evaluated callers on every tested SV size range and depth level. Other callers required at least 30x depth to reach sawfish at 15x:View quoted post on X
