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Chenhao Li

@li_chenhao

Postdoc @TheXavierLab\n|PhD @astar_gis under @NiranjanTW\n|Computational biology, Micrombiome, Spatial transcriptomics
Cambridge, MA Joined January 2015
510 Following 401 Followers 1.6K Posts

Latest posts 5

Chenhao Li @li_chenhao
Did a quick experiment with the data from PRJNA1101467. I ran Sylph on the reads and was ONLY able to detect bacterium from SRR32957579 (positive control - Stenotrophomonas maltophilia detected in the 4 isolate samples SRR32957488-SRR32957579).
Nature Biotechnology Verified account @NatureBiotech Jul 8, 2025
Modifications of microbiome-derived cell-free RNA in plasma discriminates colorectal cancer samples bit.ly/3TYj96P
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Chenhao Li @li_chenhao
It was such an experience working on this large-scale dataset and most importantly in the team with diverse backgrounds. I have learned so much from @TouficMayassi and other members of @TheXavierLab.
Toufic Mayassi @TouficMayassi Nov 21, 2024
6/ Next challenge - reconstruct the tissue to its native state and unify segments within and across mice to facilitate downstream analysis and visualization. Enter the room @li_chenhao, a brilliant scientist that helped me supercharge the study along with my computational skills.
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Chenhao Li @li_chenhao
Just tried Sylph github.com/bluenote-1577/… by @jim_elevator. Processed >2000 samples in a few hours on google cloud powered by @TerraBioApp. Roughly 15min per sample. Briefly checked the abundances and they match pretty well with what we got using an independent workflow.
github.com GitHub - bluenote-1577/sylph: ultrafast taxonomic profiling and genome querying for metagenomic... ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash. - bluenote-1577/sylph
0 replies 7 reposts 18 likes 1.2K views View on X
Chenhao Li @li_chenhao
Genetic vulnerability to Crohn’s disease reveals a spatially resolved epithelial restitution program | Science Translational Medicine science.org/doi/10.1126/sc…
www.science.org Genetic vulnerability to Crohn’s disease reveals a spatially resolved epithelial restitution program The HGFAC-MSP-RON axis activates wound-associated epithelial cells that promote intestinal healing via a spatially restricted retinoic acid gradient.