Martin Hemberg

@m_hemberg

Computational biologist. Scrabble addict. Crossfit junkie.

Boston, MA Joined July 2015

146 Following 1.2K Followers 425 Posts

Latest posts 5

Martin Hemberg @m_hemberg Mar 4, 2022

Another great collaboration with @ericmiskalab pushed by the very talented and ambitious @DerRiehl

Eric Miska Lab @ericmiskalab Mar 3, 2022

Latest paper @NAR_Open! Former student @DerRiehl introduces TransposonUltimate: a bundled software for transposon classification, annotation & detection. Examples using C. elegans, R. irregularis and Oryza sativa (japonica) genomes. @criccio517 @m_hemberg academic.oup.com/nar/advance-ar…
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Martin Hemberg @m_hemberg Oct 5, 2021

If you ignore the masks it is like 2019 again. Great to be teaching scrnaseq analysis in person again with actual coffee breaks @talandrews @sterding @ilyakorsunsky

Martin Hemberg @m_hemberg Sep 17, 2021

Now that I am allowed back in the office I am proud to announce my first contribution to the Evergrande center lunch room. This key piece of hardware will likely improve productivity by 0.000001%

Martin Hemberg @m_hemberg Sep 16, 2021

Splendid work by @JoachimDeJonghe and @ge_parada on the splicing analysis, which includes an extension of the MicroExonator pipeline

Joachim De Jonghe @JoachimDeJonghe Sep 16, 2021

We then teamed-up with @ge_parada and @m_hemberg to see if the full-length coverage offered by the method uncovered cell-type specific #alternativesplicing motifs, and there was a lot there! This was adapted from their MicroExonator pipeline bit.ly/3ly0XiG 📈(10/n)
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Martin Hemberg @m_hemberg Sep 16, 2021

Grateful to have been able to contribute to this fantastic paper. VASA-seq really takes single-cell analysis to a new level as it allows you to profile transcripts and splicing events rather than just genes.

Anna Alemany @annionna Sep 16, 2021

Excited to share VASA-seq online, scRNA-seq providing full gene body coverage & non-coding RNA expression From @AlexandervanOu1 @hollfelderlab @m_hemberg labs, big thanks to @JoachimDeJonghe @ge_parada @AMartinezArias and F.Salmen for the fun dicussions! biorxiv.org/content/10.110…
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