Josh Moore

@notjustmoore

#RSEng for @GerBI_GMB and TA1 lead for @NFDI4BIOIMAGE. OSS maintainer for @openmicroscopy & @zarr_dev. @joshmoore@fediscience.org joshmoore.bsky.social

Germany joshmoore.github.io Joined July 2011

1.7K Following 913 Followers 927 Posts

Latest posts 5

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Josh Moore @notjustmoore Jul 17, 2023

Out now! "#OMEZarr: a #CloudOptimized #BioImaging #FileFormat with Int'l #Community Support" 😍

Huge thanks to the 68 co-authors, across 32 institutions (see the quoted tweet) 🙌

If you use #OMEZarr & weren't involved, let's start the next report! 📝

doi.org/10.1007/s00418…

link.springer.com OME-Zarr: a cloud-optimized bioimaging file format with international community support Histochemistry and Cell Biology - A growing community is constructing a next-generation file format (NGFF) for bioimaging to overcome problems of scalability and heterogeneity. Organized by the...

Josh Moore @notjustmoore May 8, 2023

#OMEZARR @biorxivpreprint v4 now available

with newly added teams incl. @CiminiLab @fabian_theis @imweio @loicaroyer @ngehlenborg @OliverStegle @sonamix & an apparently elusive Nathan Hotaling

❤️Love to see the growing list of resources, e.g. ngff.openmicroscopy.org/data/

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Josh Moore @notjustmoore Oct 26, 2024

If you've ever wondered about rendering @zarr_dev in @Blender, you should check out @GrosOane's video! 🤩

Oane Gros @GrosOane Oct 21, 2024

Microscopy Nodes 2.0 is out! This includes a new channel interface and OME-Zarr support! 🔬🎉

youtube.com/watch?v=ybQcKE…
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Josh Moore @notjustmoore Aug 20, 2024

The @nfdi4bioimage proposal is now on Zenodo! 🎉

With thanks to @SchmChristian for herding the authorial cats and to said cool cats for making all of this happen.

bit.ly/n4bi-proposal

#bioimaging #rdm #FAIR #NFDI

A screenshot of the Zenodo page for the proposal showing the title "NFDI4BIOIMAGE National Research Data Infrsatructure for Microscopy and Bioimage Analysis" with the author list.

Josh Moore @notjustmoore May 21, 2024

Tomorrow is the last day for the registration for #OME2024! ⏳

openmicroscopy.org/events/ome-com…

www.openmicroscopy.org The Open Microscopy Environment A consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.

Josh Moore @notjustmoore Apr 11, 2024

Looking for a way to share your spatial omics datasets?

If you haven't checked out the #SpatialData article (link) or code (quoted tweetorial), now may be the time.

#OMENGFF images🔬integrated with #AnnData tables 📑 all wrapped into #Zarr packages. 🥰

doi.org/10.1038/s41592…

Fig. 1 from the Nature Methods paper titled "SpatialData Framework". Please see the legend for the full description.

Luca Marconato @LucaMarconato2 Apr 11, 2024

1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository: github.com/scverse/spatia…
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